Insertion junction: CLIP2.064533_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.064533
Chromosome:plastome
Location:101919
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802308 ChreCp044,2716995,psbL photosystem II reaction center subunit XII; (1 of 1) K02713 - photosystem II PsbL protein (psbL) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACTTTAATAAATAACCAAAACGTTATTTTTATAGTTATAGACATTAGT
Internal bar code:AAACTAGAGATACGTTGTGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:62
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TTACTTAGGACGGCAGTGGC
Suggested primer 2:GCGGCTGTGGCTGTAGATAT