Insertion junction: CLIP2.064635_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.064635
Chromosome:chromosome 7
Location:3704290
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g337750 EBM5 (1 of 3) PTHR31451//PTHR31451:SF1 - FAMILY NOT NAMED // MANNAN ENDO-1,4-BETA-MANNOSIDASE 2-RELATED; Mannan endo-1%252C4-beta-mannosidase 3'UTR
Cre07.g337800 MRPS17,uS17m (1 of 3) PTHR10744 - 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER; Mitochondrial ribosomal protein S17 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGAATGACATTCATGGGTGCAATAATGGCACCCCGATTGCACGTGATGA
Internal bar code:TATCGGCTTTGTGGGTAGGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2464
LEAP-Seq percent confirming:96.875
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCCGTCTGCAGGAAGTTT
Suggested primer 2:CTACCACCCCATTGCCACAT