Insertion junction: CLIP2.064799_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.064799
Chromosome:chromosome 17
Location:2820129
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre17.g718400 (1 of 1) IPR001810//IPR011050 - F-box domain // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGCAAGGGGGCAGTGACCTGCTTCCTACGGTTGTGGCACCGGGCTGGT
Internal bar code:ATGAGGAGTTCTGGGTTCCTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:586
LEAP-Seq percent confirming:76.9231
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCTGGGCTCTCCTTTTGC
Suggested primer 2:GGTTTGAGTTTCACACCGGC