Insertion junction: CLIP2.064808_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.064808
Chromosome:chromosome 3
Location:1055554
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g148250 CGL58 (1 of 1) PTHR15856//PTHR15856:SF25 - PHD FINGER PROTEIN 20-RELATED // SUBFAMILY NOT NAMED; Conserved in the Green Lineage 3'UTR
Cre03.g148300 outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCGCCCCGCCCTGCACGCCGCGCTGCCCCTGACTAGCATCCAGCCGTT
Internal bar code:CATCAGAGCTTAATTATGTGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:979
LEAP-Seq percent confirming:96.1538
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:TGATCCCGCACTCATCATCG
Suggested primer 2:ATGAGGCAGCAGTTCCTGAC