Insertion junction: CLIP2.064824_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.064824
Chromosome:chromosome 9
Location:4260636
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre09.g801046 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGAGGGCGACCCTCGCATGCCGCCCCCGGATGCGTCCCTTCTGCGGGGT
Internal bar code:GCCAGGGAGTTGTGGGGTCAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:400
LEAP-Seq percent confirming:5.88235
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCTTCTTGCCCTGTCAGG
Suggested primer 2:ATGCTCCGACGTCTGCTTAG