Insertion junction: CLIP2.064870_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.064870
Chromosome:chromosome 3
Location:7727037
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g203500 Protein tyrosine kinase; (1 of 107) PF00069//PF07714 - Protein kinase domain (Pkinase) // Protein tyrosine kinase (Pkinase_Tyr) 5'UTR
Cre03.g203550 GT90-3,GT90F3 GT90 family protein 3; (1 of 52) PF05686 - Glycosyl transferase family 90 (Glyco_transf_90) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGGGTGCAGCCCAGATTTGCATGTAATAGGGATCTATAGCTTGGGCAAA
Internal bar code:CCTTATGGAGCGAATACACGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1396
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:ATCGAAAGCCGCCTTGTACA
Suggested primer 2:TCCCACAATCGCTTACCACC