Insertion junction: CLIP2.064951_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.064951
Chromosome:chromosome 3
Location:5205764
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g181650 (1 of 1) PTHR20973//PTHR20973:SF0 - NON-SMC ELEMENT 1-RELATED // NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 1 HOMOLOG 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATTATCAGTCATACGGAACGAGGGGGGATACTTGTTAATGCAGCGCATG
Internal bar code:TGCTTTAGGCGTATGCCCACCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1184
LEAP-Seq percent confirming:70.0
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:TATTTCCAGCGCGCCCTAAT
Suggested primer 2:CTGGTCCTATCCACGCTGTC