Insertion junction: CLIP2.064965_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.064965
Chromosome:chromosome 7
Location:1427104
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g323350 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 5'UTR
Cre07.g323400 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTCGCAGATGCATTGCACTTTGGATAGCATTACCGAACGGGCGTGGGA
Internal bar code:ATCAGCTTGGACTCAGGCCGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:601
LEAP-Seq percent confirming:36.1111
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:CGCAATTAACGTGCCTCGAG
Suggested primer 2:CGGGCCAGGATGTGATCTAC