Insertion junction: CLIP2.064984_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.064984
Chromosome:chromosome 9
Location:5883889
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g411900 SHMT3 (1 of 3) 2.1.2.1 - Glycine hydroxymethyltransferase / Threonine aldolase; Serine hydroxymethyltransferase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCCATGTCGGCACGTTTCCATGCGCCGTGCATGACCACGCCGGGCGTGA
Internal bar code:AATTCTAGCTGCAGTATTGCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1383
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TATACGATGTCGCGGGTGTG
Suggested primer 2:GAGCACTAATCTCCGGGTCG