Insertion junction: CLIP2.065015_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.065015
Chromosome:chromosome 7
Location:1551668
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g324800 SNE6 (1 of 8) PTHR10366//PTHR10366:SF411 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN; Cinnamoyl-CoA reductase/flavanone 4-reductase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTCCTTGTTAGCGCTCCTGTAAATGCCGCTGTTTGTGTCTCTGTGAGC
Internal bar code:TTATGATTCAGGATACTCGTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2561
LEAP-Seq percent confirming:58.3333
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:TGGCGGTTTACTTTTTGGCG
Suggested primer 2:GTGGTTGGTGTGTGGCAATC