Insertion junction: CLIP2.065042_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.065042
Chromosome:chromosome 17
Location:3151369
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre17.g720750 TRF4 (1 of 3) K03514 - non-canonical poly(A) RNA polymerase PAPD5/7 (PAPD5_7, TRF4); Class-II RNA nucleotidyl transferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCCGCCACGCACCCTGGTGCAGCCGCAGCAGCGGGCTCTCTATCCGCG
Internal bar code:TCGGTACACGGCAAGCCGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:770
LEAP-Seq percent confirming:2.63158
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:37
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:CTATTGTCGGACTCGGACGG
Suggested primer 2:TGGCACTTACAATCCCCCAC