Insertion junction: CLIP2.065102_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.065102
Chromosome:chromosome 16
Location:5692647
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g680900 RPB1 (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A); DNA-directed RNA polymerase II, largest subunit 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGACAGGCGCGCGCCGAGTAGACTTGGCGCGGGTGCTGAGGCTCTGCA
Internal bar code:CATAGGGCACCTCAAGTGTCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:4948
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:TACGGATTGCCCTACTCCCA
Suggested primer 2:GTTCACGGGGTGGTTCAGAT