Insertion junction: CLIP2.065126_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.065126
Chromosome:chromosome 6
Location:6137574
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g291500 RWP6 (1 of 16) PF02042 - RWP-RK domain (RWP-RK); RWP-RK transcription factor 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGACTTTGAACTGTATTTAAGGTTAATGTGCACATGGCATCGCAACAC
Internal bar code:TATTGCCTAATCACTTATTACT

Confirmation - LEAP-Seq

LEAP-Seq distance:2602
LEAP-Seq percent confirming:98.3333
LEAP-Seq n confirming:59
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGCTAGGGTGTCGAAAGC
Suggested primer 2:GTGTGGTGTTGGTGGCAATC