Insertion junction: CLIP2.065312_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.065312
Chromosome:chromosome 16
Location:4626976
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g670750 (1 of 1) IPR012312//IPR012827 - Haemerythrin-like // Haemerythrin, metal-binding domain 3'UTR
Cre16.g670754 (1 of 1) PTHR10217//PTHR10217:SF512 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTTTTGGATGGAGGAGCAGTTGAGGAGATGATTGGTTCGGTCGCAGTAC
Internal bar code:CCTGTCGACAGGAATGCCTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1292
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:GGGTTTGGGGCGAATTCCTA
Suggested primer 2:AGCAGAAACAGAGACGGGTG