Insertion junction: CLIP2.065339_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.065339
Chromosome:chromosome 12
Location:150608
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g484300 3'UTR
Cre12.g484350 CKIN beta-gamma,SNRKBG1 regulatory subunit beta-gamma of snRK1 complex in Chlamydomonas; (1 of 1) K07200 - 5'-AMP-activated protein kinase, regulatory gamma subunit (PRKAG) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGGCTCCAGCTGCCTTGGGTGCCGCACCCGTTGGCCTAGAACCTCAAA
Internal bar code:TTCGGTATAGACAAAGTGTACG

Confirmation - LEAP-Seq

LEAP-Seq distance:2010
LEAP-Seq percent confirming:79.4872
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:GCTCCCTCTGCATGTCTTGT
Suggested primer 2:CCTACGCGTACGGTATGGAC