Insertion junction: CLIP2.065384_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.065384
Chromosome:plastome
Location:130259
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802318 ChreCp054,2716983,atpF ATP synthase CF0 B subunit; (1 of 1) PTHR34264:SF3 - ATP SYNTHASE SUBUNIT B, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTAGGACGGCAATGTATATTTATATACTAGGACGTCCCCTTACGGGAA
Internal bar code:GCTTTGTAACGGGTAGTTTCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:815
LEAP-Seq percent confirming:36.8421
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TGTGTCAGTGACTGTTCGCA
Suggested primer 2:CGTACGTGCGGCAGTTAATT