Insertion junction: CLIP2.065386_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.065386
Chromosome:chromosome 3
Location:1152530
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g149150 (1 of 1) IPR000104//IPR013022 - Antifreeze protein, type I // Xylose isomerase-like, TIM barrel domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGACGCAATCAAGAACCTCCAAACGCTGTCGGAGCAGAGTTCAGGCACA
Internal bar code:AGGTCCCCGCACAAGGGGGTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1824
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CCGCAAACAGCTCATCATCG
Suggested primer 2:ATCATGTTTGATCGCGCAGC