Insertion junction: CLIP2.065412_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.065412
Chromosome:chromosome 11
Location:3591355
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g478050 (1 of 12) IPR000104//IPR002893 - Antifreeze protein, type I // Zinc finger, MYND-type 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACAGTGGGAACTAACACGGAAAGGCAGAGCAGTCTTCCGCAAAATCGT
Internal bar code:GCAGGGTGATTCAAGGCCGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:888
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCAACGGTGTAGTCAGGC
Suggested primer 2:GCGCACTACTTACACAAGCG