Insertion junction: CLIP2.065415_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.065415
Chromosome:chromosome 2
Location:7162393
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g390356 (1 of 1) PTHR22849//PTHR22849:SF0 - WDSAM1 PROTEIN // WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 5'UTR
Cre09.g390430 (1 of 1) K13108 - smad nuclear-interacting protein 1 (SNIP1) gene_edge/mRNA_edge/5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCGAAATTGAGAAACCGGAGCAATCCATGAAGTCAAAGTTAGGCCAGAC
Internal bar code:TGCTTACCGTGGTAGCTAGAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2375
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CGCCAGTAGCCTGAGATCTG
Suggested primer 2:ACTCCAGTAACTGCCACACG