Insertion junction: CLIP2.065415_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.065415
Chromosome:chromosome 2
Location:7162398
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g390356 (1 of 1) PTHR22849//PTHR22849:SF0 - WDSAM1 PROTEIN // WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 5'UTR
Cre09.g390430 (1 of 1) K13108 - smad nuclear-interacting protein 1 (SNIP1) gene_edge/mRNA_edge/5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGGATTCACCGTAGCTGCGCCACCCAAAGCTCTTCCGGTATTAATACCC
Internal bar code:TGCTTACCGTGGTAGCTAGAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2628
LEAP-Seq percent confirming:91.8919
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:ACTCCAGTAACTGCCACACG
Suggested primer 2:CGCCAGTAGCCTGAGATCTG