Insertion junction: CLIP2.065429_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.065429
Chromosome:chromosome 1
Location:4613057
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g031850 ACD1 (1 of 1) PTHR10314//PTHR10314:SF70 - SER/THR DEHYDRATASE, TRP SYNTHASE // SUBFAMILY NOT NAMED; 1-aminocyclopropane-1-carboxylate deaminase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAAAAGCTCATCCGCAGAAACTGCCGCGGTGCCAACCACACGGAGGCA
Internal bar code:TTGTTGATGATGAGCGTCATGA

Confirmation - LEAP-Seq

LEAP-Seq distance:195
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:GGTAATAGGCGGTCCCTTCG
Suggested primer 2:GTCGAGGTCAGTGACTTGCA