Insertion junction: CLIP2.065515_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.065515
Chromosome:chromosome 6
Location:3505229
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278116 (1 of 1) IPR008136 - CinA, C-terminal 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAAAGGACCCGTTGAGGCAGGGGAGGCAGAGGGAGCCCAGGGCTGCCT
Internal bar code:CGTGATTGGACTCTCTAGAAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1133
LEAP-Seq percent confirming:96.3636
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGCTATGCGGCAATATCA
Suggested primer 2:TCACTTGATCCCGCAATGCT