Insertion junction: CLIP2.065634_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.065634
Chromosome:chromosome 1
Location:2435012
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g014050 (1 of 1) PF16543 - DRG Family Regulatory Proteins, Tma46 (DFRP_C) 3'UTR
Cre01.g014100 (1 of 1) PTHR14614//PTHR14614:SF29 - HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN // PROTEIN FAM86A 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCAACGCCTCCACGTCCGCCAAACACGCCACCGTTTCATGCCCGTCACC
Internal bar code:TGAGCAGGTTTTATCTTGATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:812
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GTATTCAGCCCTGCCCTTGT
Suggested primer 2:GCACTAAGCAATGTCGAGCG