Insertion junction: CLIP2.065637_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.065637
Chromosome:chromosome 9
Location:1089252
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401800 (1 of 4) 2.7.10.2//2.7.11.1//2.7.12.1 - Non-specific protein-tyrosine kinase / Cytoplasmic protein tyrosine kinase // Non-specific serine/threonine protein kinase / Threonine-specific protein kinase // Dual-specificity kinase 3'UTR
Cre09.g800994 (1 of 8) IPR000719//IPR001245//IPR011009 - Protein kinase domain // Serine-threonine/tyrosine-protein kinase catalytic domain // Protein kinase-like domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAACAACCACAATGTCCAACTGTGAGCTGTGCAAGTGTGTGCGACCCTCA
Internal bar code:GTGTTGGCCCTGGGAAGATGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2322
LEAP-Seq percent confirming:73.3333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCACGTCAAGACCTGGTG
Suggested primer 2:GTGAGGCTGCAGGAGATGTT