Insertion junction: CLIP2.065673_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.065673
Chromosome:chromosome 17
Location:5207203
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g737050 (1 of 1) PTHR22957//PTHR22957:SF287 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN // SUBFAMILY NOT NAMED 3'UTR
Cre17.g737084 (1 of 1) PTHR15863//PTHR15863:SF2 - FAMILY NOT NAMED // UPF0544 PROTEIN C5ORF45 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGGTAACAAGCGCCCAGTGAACACCCAAGCGCTGCCCCTCGTCATTTC
Internal bar code:CCTGCTAGAATTAAGAGTTCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:5264
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:107
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:107

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCGATGGTCTGTTTGTGA
Suggested primer 2:GAATCCGAGAGCTCCGATGG