Insertion junction: CLIP2.065710_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.065710
Chromosome:chromosome 3
Location:6605042
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g194800 (1 of 1) K14399 - polyribonucleotide 5'-hydroxyl-kinase (CLP1, HERB) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCTTTTGTTTACGGCGCAGATTCTCTGCGGGTCATGTCAGCCCCCCAT
Internal bar code:GTGTCTTATTTAGGCGAGAAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2206
LEAP-Seq percent confirming:77.9661
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:59

Suggested primers for confirmation by PCR

Suggested primer 1:AGACCATCGAATGCTGCCAA
Suggested primer 2:GTGAAGATGTTGGGGAGGGG