Insertion junction: CLIP2.065742_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.065742
Chromosome:chromosome 5
Location:226922
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g243050 TRX3,TRXf2,TRXF2 (1 of 1) PTHR10438:SF258 - THIOREDOXIN F1, CHLOROPLASTIC-RELATED; Thioredoxin f2, chloroplastic outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAAGCGGAGGGGAGGCGACGGTGGATGCGTGCCGCCGGTGGAGGCGAGG
Internal bar code:TAGGCTACTTATGGCTTCGGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:3014
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TCCGTGTCAATCACCTTGGG
Suggested primer 2:CCTCACATTGCACCCTCCAT