Insertion junction: CLIP2.065772_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.065772
Chromosome:chromosome 6
Location:1858298
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g263850 PPT2,TPT2,TPT20 Triose phosphate/phosphate translocator; (1 of 2) PTHR11132:SF70 - PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 1, CHLOROPLASTIC gene_edge/outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCCCGTCGCACCCAATCCCTGACACGGGCACCATAACTCCGTAAACGCC
Internal bar code:CTCGCGGATGGTGGTTTGTCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1047
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:AGTCGGATGGGTGCAATTGT
Suggested primer 2:CCCTTCCAGTAGGCAGTGTG