Insertion junction: CLIP2.065825_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.065825
Chromosome:chromosome 8
Location:3708440
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g380300 MSRA3 (1 of 1) PTHR10173//PTHR10173:SF30 - METHIONINE SULFOXIDE REDUCTASE // SUBFAMILY NOT NAMED; Peptide methionine-S-sulfoxide reductase, msrA-type 3'UTR
Cre08.g380350 (1 of 117) IPR002893 - Zinc finger, MYND-type 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCGGCCGTGGCAGGGACGGTTGCCACCTCGACGCCTCCCATCACCTGCC
Internal bar code:GGTCTCCATAGGGTTAAGGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:3196
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCGGCTTGGTTAGGTGAT
Suggested primer 2:CATACCGTCGTAGTCCTGCC