Insertion junction: CLIP2.065863_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.065863
Chromosome:chromosome 6
Location:7063963
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g297650 UBC36 (1 of 1) K10582 - ubiquitin-conjugating enzyme E2 Q (UBE2Q); E2 ubiquitin conjugating enzyme 3'UTR
Cre06.g297700 (1 of 1) IPR013026//IPR019734//IPR027417 - Tetratricopeptide repeat-containing domain // Tetratricopeptide repeat // P-loop containing nucleoside triphosphate hydrolase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGCTTCATTCCGCAGTGCGTGCCTGCCCAGTTGCGCACGCCAAGCTTG
Internal bar code:AGCATTAGACTATATGAGATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2195
LEAP-Seq percent confirming:98.5916
LEAP-Seq n confirming:70
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:71

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTTGACAACATGCAGGCG
Suggested primer 2:TGGTCGACCTTCACATGTGG