Insertion junction: CLIP2.065905_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.065905
Chromosome:chromosome 16
Location:593551
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g692200 MMP6 (1 of 1) IPR003609//IPR008752 - PAN/Apple domain // Peptidase M11, gametolysin; Metalloproteinase of VMP family 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCACGGCGACAAGGTCTGCGCTTCATCAGCACAGTTCTGTGTATGTAAG
Internal bar code:TCTAGGTTTCCGTTGGGATTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:4820
LEAP-Seq percent confirming:97.5
LEAP-Seq n confirming:78
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:80

Suggested primers for confirmation by PCR

Suggested primer 1:ACATCACGGCTGCTATCGAG
Suggested primer 2:GTTGTGCGCAAACCAGCTAA