Insertion junction: CLIP2.066198_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.066198
Chromosome:chromosome 5
Location:2457107
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g238935 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAAGACGACGTTTTGATACCAGACAGAGTCCTATCACTCCTATGCGGCT
Internal bar code:TCACGAATTGGACGACATACGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1448
LEAP-Seq percent confirming:95.1219
LEAP-Seq n confirming:78
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:82

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTGCTTGGGACTGAACGT
Suggested primer 2:GCAGAAGTGTAGCGCGAATG