Insertion junction: CLIP2.066246_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.066246
Chromosome:chromosome 10
Location:2211074
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g433650 TMC3 (1 of 4) 2.1.1.178 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase; putative tRNA (cytosine-5)-methyltransferase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAAACAATGGGCTCATCAGCAACTGGCAAATGGTGCACAACGAGGACTA
Internal bar code:AAAAGTTTGGGTGGGTACCTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1627
LEAP-Seq percent confirming:93.1034
LEAP-Seq n confirming:54
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGAGCTTCAAGGGACTGG
Suggested primer 2:CTGACTTCTGGGGCTTGGAG