Insertion junction: CLIP2.066394_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.066394
Chromosome:chromosome 9
Location:6001011
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g412450 RAD21 (1 of 3) PF04824 - Conserved region of Rad21 / Rec8 like protein (Rad21_Rec8); cohesin complex subunit, putative mitotic isoform 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCATTAACCTGTCATTGACTTCCTGAACAGAATTACTTGACTTTCATCT
Internal bar code:GTGGTTGAAGTCAGATTGCTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1017
LEAP-Seq percent confirming:88.0952
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCCAATAGAGCTGGTGTT
Suggested primer 2:TTGGCAGTGAGACCTAAGCG