Insertion junction: CLIP2.066515_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.066515
Chromosome:chromosome 3
Location:1152612
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g149150 (1 of 1) IPR000104//IPR013022 - Antifreeze protein, type I // Xylose isomerase-like, TIM barrel domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGAGAACGTGCACCGCGTGCTGCTTTAATTTGTGCCTGAACTCTGCTC
Internal bar code:ACGGCATGCTTACCCGTTATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1665
LEAP-Seq percent confirming:97.619
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGGAGATGCGCGAGATGA
Suggested primer 2:CCGCAAACAGCTCATCATCG