Insertion junction: CLIP2.066568_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.066568
Chromosome:chromosome 11
Location:3367448
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre11.g476900 (1 of 1) PTHR12465//PTHR12465:SF0 - UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGCCTCACCATTACACTCATAGCCCTGCCCAACCATTCTACCGCAACT
Internal bar code:TCCTAGGAAACTTAAGCGGACG

Confirmation - LEAP-Seq

LEAP-Seq distance:374
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCCTTCTGCTATGTGGTT
Suggested primer 2:CTCACAGGCTGGACATCGTT