Insertion junction: CLIP2.066599_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.066599
Chromosome:chromosome 2
Location:1792946
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g086750 (1 of 1) PTHR12709:SF5 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCATACTGTCAGTCTGTCACGCCATATACGGCGAGTTCGCGTGCCCCGC
Internal bar code:GGTCTAGGGAGAGATGACAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:624
LEAP-Seq percent confirming:57.1429
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGACACACCACATCCAGG
Suggested primer 2:TACACGGGACTTGACACACG