Insertion junction: CLIP2.066635_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.066635
Chromosome:chromosome 4
Location:3742737
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre04.g229374 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCTACCACCAGTGCAAGTGCTGACTGAGGCACCGGAGCCTGGTGCCTGG
Internal bar code:TAATCTTAAAACACAAAACTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:4807
LEAP-Seq percent confirming:21.0526
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:CAGAGCCAGAGAGCTTCCAG
Suggested primer 2:GGGACTCTCAGTCTTTGGCC