Insertion junction: CLIP2.066777_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.066777
Chromosome:chromosome 6
Location:373112
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre06.g251500 SPS1 (1 of 1) K18787 - thermospermine synthase (ACL5); Spermine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTACTGGTAGGCGCCAACGCGCCCCCATCAGGTGACTCCCACGGGTGGCT
Internal bar code:GCTAGCGACGGGGATACGGCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:849
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:TGTAGAGCTGTTGCGCTTGA
Suggested primer 2:GTTCGTGGGATGCTTTGCTC