Insertion junction: CLIP2.066900_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.066900
Chromosome:chromosome 10
Location:3728867
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre10.g801156 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCGCCCCAGGCAGCGGCGCCGCCAGTGACGGACGCGGGCTTCATGCTG
Internal bar code:ATCGGCTACTCCGAGGTTCGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:201
LEAP-Seq percent confirming:97.6744
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:AACACATGGGCGCCAGATAA
Suggested primer 2:GCGAGGTCCAAGGTTCAAGA