Insertion junction: CLIP2.066951_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.066951
Chromosome:chromosome 14
Location:3937691
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g632815 (1 of 1) PTHR14614//PTHR14614:SF23 - HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN // SUBFAMILY NOT NAMED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGGGGCGCGCCAGTTTGGCGTGACGGGTACGTGCCGCCGGCACGGTCA
Internal bar code:CGGTATAGACGACTCAACGGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1338
LEAP-Seq percent confirming:96.1538
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:AGCCTCCCACCCATGAAAAG
Suggested primer 2:CAGCGCCCAGGATTGCTATA