Insertion junction: CLIP2.067001_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.067001
Chromosome:plastome
Location:171179
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802327 2716959,atpI,ChreCp062 ATPase IV subunit; (1 of 1) K02108 - F-type H+-transporting ATPase subunit a (ATPF0A, atpB) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTAATAAGGCACCTGACCAGTTAGAAACGAAAATAAATAAGAAAATAG
Internal bar code:GGATTGTCCGCAATTCAGCTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:154
LEAP-Seq percent confirming:4.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGGCAAACTGTGAGGCTG
Suggested primer 2:GCACCCGCTAAAGTTGCAAA