Insertion junction: CLIP2.067066_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.067066
Chromosome:chromosome 12
Location:1587447
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g487150 PGM20 (1 of 2) PTHR23029//PTHR23029:SF24 - PHOSPHOGLYCERATE MUTASE // SUBFAMILY NOT NAMED; Putative phosphoglycerate mutase 3'UTR
Cre12.g487200 (1 of 5) IPR001680//IPR011047//IPR017986//IPR020472 - WD40 repeat // Quinonprotein alcohol dehydrogenase-like superfamily // WD40-repeat-containing domain // G-protein beta WD-40 repeat 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTCAAAGGGAGTCGGGAGACGCCGCGTGTCAGGCTTGCCCCACTTGCG
Internal bar code:CCAGCGGTAAACAAAGTATAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2209
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:44
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:GACCTTCACACCGGTCATGT
Suggested primer 2:CGGATCCACAGAGGTGTACG