Insertion junction: CLIP2.067123_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.067123
Chromosome:chromosome 13
Location:2967815
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g801540 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTCTTCGGGAGCTGGGACTGTCCCCTCTGTAACATCCGCATCCATAGCA
Internal bar code:GTTTGCTGATAGGTTGGGGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1954
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:AACTCGTGGGCGTTTACCAT
Suggested primer 2:TGGTTTTGGGACTGCACTGT