Insertion junction: CLIP2.067142_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.067142
Chromosome:plastome
Location:74036
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802293 orf202 Wendy transposon CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAAAAACAATTAATGCTGTTTTTAGAGACGTTCGTAATCATCGTAGATA
Internal bar code:GACGGTTCAGAAAAATGAAATC

Confirmation - LEAP-Seq

LEAP-Seq distance:83
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:ACACTAACCCGCTTATGGCC
Suggested primer 2:GACACCTCCCTTTCACGGAG