Insertion junction: CLIP2.067175_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.067175
Chromosome:chromosome 5
Location:3525177
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g233600 DIV55 [RNA-polymerase]-subunit kinase / CTD kinase; (1 of 13) 2.7.11.23 - [RNA-polymerase]-subunit kinase / CTD kinase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGCTACCGCGCGCGGCCGTGTCTGTACCAACTATCTGCCAGCACGGTGT
Internal bar code:ACCGATGAAACGAACAGATGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2316
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTCAACGGTTTTCGCTGC
Suggested primer 2:TGTGCTAGGTGGCATTCGTT