Insertion junction: CLIP2.067175_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.067175
Chromosome:chromosome 5
Location:3525183
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g233600 DIV55 [RNA-polymerase]-subunit kinase / CTD kinase; (1 of 13) 2.7.11.23 - [RNA-polymerase]-subunit kinase / CTD kinase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGTTGCAACCTGCCAGTTGCTTTCTAAGAATTAGAAGCCTGTTGTTGT
Internal bar code:ACCGATGAAACGAACAGATGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:267
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:TGTGCTAGGTGGCATTCGTT
Suggested primer 2:AGTTCAACGGTTTTCGCTGC