Insertion junction: CLIP2.067196_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.067196
Chromosome:chromosome 6
Location:6269980
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g292400 SOUL5 (1 of 8) PF10184 - Uncharacterized conserved protein (DUF2358) (DUF2358); DUF2358 domain protein 3'UTR
Cre06.g292450 PUS13 RNA pseudouridine synthase; (1 of 1) 5.4.99.44 - Mitochondrial tRNA pseudouridine(27/28) synthase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCACACTGCCGTGTCGTTGTGCCACCAAGTGCACCACTGGGGACACCCCC
Internal bar code:AGTCCACTAGGTAAGGTTGCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3056
LEAP-Seq percent confirming:93.5065
LEAP-Seq n confirming:72
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGTGTACGGACGCGAAGA
Suggested primer 2:TTCGGCTTCAGGTCTTGGTC