Insertion junction: CLIP2.067225_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.067225
Chromosome:chromosome 3
Location:3494773
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g167250 (1 of 1) PF05673 - Protein of unknown function (DUF815) (DUF815) 3'UTR
Cre03.g167300 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGAGCTCCGGCGCAGGGCGGCACTGTACTCCGGCCATAGTGTCTAGGG
Internal bar code:GTAGTGTCAAGTCGCCGTAGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1253
LEAP-Seq percent confirming:53.5714
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CGAGTCCTGGCCTTTCATGT
Suggested primer 2:GTGGCGGATACTGTCGAGAG