Insertion junction: CLIP2.067256_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.067256
Chromosome:plastome
Location:32562
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802283 rps4,ChreCp020,2716955 30S ribosomal protein S4; (1 of 1) PTHR11831:SF4 - 37S RIBOSOMAL PROTEIN NAM9, MITOCHONDRIAL CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGACGAATAACTCTCAAACGAGGGCCTAAATAACGTGACATAATTTTTTA
Internal bar code:ACCGACTGTCGAACCGCTCATG

Confirmation - LEAP-Seq

LEAP-Seq distance:473
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TTGAAAAATGGGCGTGCGAC
Suggested primer 2:GCGTGCTGCTGGAATTGTAG